Publications¶
If you use CATMAID, please cite the following papers:
- Casey M Schneider-Mizell, Stephan Gerhard, Mark Longair, Tom Kazimiers, Feng Li, Maarten F Zwart, Andrew Champion, Frank M Midgley, Richard D Fetter, Stephan Saalfeld, Albert Cardona. Quantitative neuroanatomy for connectomics in Drosophila, eLife, 2016.
- Stephan Saalfeld, Albert Cardona, Volker Hartenstein, Pavel Tomančák. CATMAID: collaborative annotation toolkit for massive amounts of image data, Bioinformatics, 2009.
Publications using CATMAID¶
The following publications used CATMAID for neural circuit reconstruction. Please get in touch with us if your publication is missing.
- Matthew E. Berck, Avinash Khandelwal, Lindsey Claus, Luis Hernandez-Nunez, Guangwei Si, Christopher J. Tabone, Feng Li, James W. Truman, Richard D. Fetter, Matthieu Louis, Aravinthan D. T. Samuel, Albert Cardona. The wiring diagram of a glomerular olfactory system, bioRxiv, 2016.
- Tomoko Ohyama, Casey M. Schneider-Mizell, Richard D. Fetter, Javier Valdes Aleman, Romain Franconville, Marta Rivera-Alba, Brett D. Mensh, Kristin M. Branson, Julie H. Simpson, James W. Truman, Albert Cardona, Marta Zlatic. A Multilevel Multimodal Circuit Enhances Action Selection in Drosophila. Nature, 2015.
- Ellie S. Heckscher, Aref Arzan Zarin, Serge Faumont, Matthew Q. Clark, Laurina Manning, Akira Fushiki, Casey M. Schneider-Mizell, Richard D. Fetter, James W. Truman, Maarten F. Zwart, Matthias Landgraf, Albert Cardona, Shawn R. Lockery, Chris Q. Doe. Even-Skipped+ Interneurons Are Core Components of a Sensorimotor Circuit that Maintains Left-Right Symmetric Muscle Contraction Amplitude, Neuron, 2015.
- Nadine Randel, Réza Shahidi, Csaba Verasztó, Luis A Bezares-Calderón, Steffen Schmidt, Gáspár Jékely. Inter-individual stereotypy of the Platynereis larval visual connectome, eLife, 2015.
- Réza Shahidi, Elizabeth A Williams, Markus Conzelmann, Albina Asadulina, Csaba Verasztó, Sanja Jasek, Luis A Bezares-Calderón, Gáspár Jékely. A serial multiplex immunogold labeling method for identifying peptidergic neurons in connectomes, eLife, 2015
- Sebastian Dunst, Tom Kazimiers, Felix von Zadow, Helena Jambor, Andreas Sagner, Beate Brankatschk, Ali Mahmoud, Stephanie Spannl, Pavel Tomančák, Suzanne Eaton, Marko Brankatschk. Endogenously Tagged Rab Proteins: A Resource to Study Membrane Trafficking in Drosophila, Developmental Cell, 2015
