Similar Software Tools

Interactive skeleton tracing and segmentation

• TrakEM2
• Knossos
• NeuTu
• Reconstruct
• Raveler (*)
• Viking (*)
• Program Elegance (*)
• SSECRETT and Neurotrace (*)
• NeuroStruct (*)
• ESPina (*)

These are all desktop-based tools. (*) are not directly available for download.

Web-based image viewer

• Mouse Brain Architecture Viewer
• Biological Image Viewer Kitware
• iConnectome
• Virtual Fly Brain
• WebImage Browser
• IIPIImage
• Djatoka
• OpenLayers
• JCB Data Viewer

iPad Apps

• WholeSlide

Segmentation Software

• Ilastik (and preview integration with CATMAID)
• Fiji